BLASTP2 Result
of 
Bork Group's Advanced BLAST2 Search Service at 
EMBL.
back to BLAST2
BLASTP 2.0MP-WashU [16-Dec-1999] [irix6-r10k-L64 23:35:48 16-Dec-1999]
Copyright (C) 1996-1999 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-1999) http://blast.wustl.edu
Query= query_sequence
(87 letters)
Database: nrdb Release 12.Jan.2001
599,711 sequences; 189,376,495 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Query sequence and locally-aligned HSPs from database sequences
0 20 40 60 80
| | | | | |87
query_sequence | __________________________________________________
^ v sptrembl|Q9RCK8|Q9 | _________________________________________________
^ v sptrembl|P73736|P7 | _________________________________________
^ v pdb|1QH6|1QH6-A | _______________________________________
^ v trembl|U21270|HS21 | _____________________________
^ v trembl|A48223|A482 | _______________________________________
^ v sptrembl|Q9XXV4|Q9 | _____________________________
^ v trembl|A45313|A453 | _______________________________________
^ v trembl|A48226|A482 | _______________________________________
^ v trembl|A68006|A680 | _______________________________________
^ v trembl|A68016|A680 | _______________________________________
^ v sptrembl|Q59257|Q5 | _______________________________________
^ v sptrembl|Q9RC94|Q9 | _______________________________________
^ v pironly|S70821|S70 | _______________________
^ v sptrembl|Q52644|Q5 | _____________________________
^ v sptrembl|Q59665|Q5 | ______________________________
^ v sptrembl|O77398|O7 | _________________________
^ v swiss|O95239|KIF4_ | ________ _____________________
^ v sptremblnew|AAD054 | ________ _____________________
^ v sptrembl|O50973|O5 | ____________________________
^ v sptrembl|O52375|O5 | _________________________
^ v trembl|AJ289343|HS | _______________________
^ v trembl|A47928|A479 | _________________________
^ v pironly|A61149|A61 | ______________________
^ v sptremblnew|CAC055 | __________________________________________
^ v pironly|A44595|A44 | ______________________________________
^ v pironly|A44594|A44 | ______________________________________
^ v swiss|P48824|XYNB_ | ___________________________
^ v sptrembl|Q9LSG6|Q9 | __________________
^ v pironly|JQ1935|JQ1 | _______________________
^ v swiss|P33558|XYNA_ | _______________________
^ v swiss|P17137|XYNA_ | ______________________________
^ v sptrembl|Q9XI03|Q9 | ____________________________________
^ v sptrembl|Q55405|Q5 | __________________
^ v trembl|A86787|A867 | ___________________________
^ v trembl|M10723|BTPO | _________________
^ v sptrembl|Q55922|Q5 | ______________________________
Alignments:
^ = sptrembl|Q9RCK8|Q9RCK8 ANTIFUNGAL PROTEIN
PRECURSOR.//:trembl|AJ242827|STE242827_1 gene: "afp"; product:
"antifungal protein"; Streptomyces tendae afp gene and ORF2
(partial), strain Tue901/8c //:gp|AJ242827|6572453 antifungal
protein [Streptomyces tendae]
Length = 128
0 30 60 90 120
| | | | | |128
sptrembl|Q9RCK8|Q9RCK | __________________________________________________
Local hits (HSPs) | _________________________________
Score = 471 (170.9 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 2 INRTDCNENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPR 61
INRTDCNENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPR
Sbjct: 43 INRTDCNENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPR 102
Query: 62 LETITLQKWGSWNPGHIHEILSIRIY 87
LETITLQKWGSWNPGHIHEILSIRIY
Sbjct: 103 LETITLQKWGSWNPGHIHEILSIRIY 128
^ = sptrembl|P73736|P73736 N-ACETYLMURAMOYL-L-ALANINE
AMIDASE.//:trembl|D90909|SSD909_22 gene: "amiA"; product:
"N-acetylmuramoyl-L-alanine amidase"; Synechocystis sp. PCC6803
complete genome, 11/27, 1311235-1430418. //:pironly|S74823|S74823
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 3 - Synechocystis
sp. (strain P//:gp|D90909|1652866 N-acetylmuramoyl-L-alanine
amidase [Synechocystis sp.]
Length = 649
0 130 260 390 520
| | | | | |649
sptrembl|P73736|P7373 | __________________________________________________
Local hits (HSPs) | _____
Score = 76 (31.8 bits), Expect = 0.17, P = 0.16
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 4 RTDCN-ENSYLEIHNNEGRDTLCFA-NAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPR 61
R D N +NS + I N + T+ F N +P ++ G + V ++F N ++PR
Sbjct: 176 RLDKNGDNSGIRIQPNARQSTVNFELNGAVLPESLVGQSLPVGQYGVEEIKFSDNPNNPR 235
Query: 62 LETITLQKWGSWN 74
L G WN
Sbjct: 236 LSLALADSGGGWN 248
^ = pdb|1QH6|1QH6-A CATALYSIS AND SPECIFICITY IN ENZYMATIC GLYCOSIDE
HYDROLASES: A 2,5B CONFORMATION FOR THE GLYCOSYL-ENZYME
INTERMIDIATE REVEALED BY THE STRUCTURE OF THE BACILLUS
AGARADHAERENS FAMILY 11 XYLANASE //:pdb|1QH7|1QH7-A CATALYSIS AND
SPECIFICITY IN ENZYMATIC GLYCOSIDE HYDROLASES: A 2,5B CONFORMATION
FOR THE GLYCOSYL-ENZYME INTERMIDIATE REVEALED BY THE STRUCTURE OF
THE BACILLUS AGARADHAERENS FAMILY 11 XYLANASE
Length = 206
0 50 100 150 200
| | | | | |206
pdb|1QH6|1QH6-A | __________________________________________________
Local hits (HSPs) | _______________
Score = 68 (29.0 bits), Expect = 0.25, P = 0.22
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
N N+ L + +T G M + YG N+ +GN + + + + DP +E +
Sbjct: 41 NVNNILFRKGKKFNETQTHQQVGNMSIN-YGANFQPNGNAYLCV-YGWTV-DPLVEYYIV 97
Query: 68 QKWGSWNP 75
WG+W P
Sbjct: 98 DSWGNWRP 105
^ = trembl|U21270|HS212701_1 gene: "VH3"; product: "immunoglobulin mu heavy
chain"; Human rearranged Ig mu heavy chain V region (VH3) mRNA,
partial cds, clone JM 0-42 VH. //:gp|U21270|773634 immunoglobulin
mu heavy chain [Homo sapiens]
Length = 123
0 30 60 90 120
| | | | | |123
trembl|U21270|HS21270 | __________________________________________________
Local hits (HSPs) | ____________________
Score = 63 (27.2 bits), Expect = 0.28, P = 0.24
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 2 INRTDCNENSYLEIHNNEGRDTL---CFANAGTMPVAIYGVNWVESGNN-VVTL 51
I+R + + YL++++ DT C + G MP YG+ WV G +VT+
Sbjct: 70 ISRDNAKNSVYLQMNSLRDEDTAVFYCARDPGGMPT--YGITWVYWGQGTLVTV 121
^ = trembl|A48223|A48223_1 unnamed ORF; Sequence 2 from Patent EP0698667.
//:gp|A48223|2302071 unnamed protein product [unidentified]
Length = 221
0 50 100 150 200
| | | | | |221
trembl|A48223|A48223_ | __________________________________________________
Local hits (HSPs) | ______________
Score = 68 (29.0 bits), Expect = 0.29, P = 0.25
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
N N+ L + +T G M + YG N+ +GN + + + + DP +E +
Sbjct: 42 NVNNILFRKGKKFNETQTHQQVGNMSIN-YGANFQPNGNAYLCV-YGWTV-DPLVEYYIV 98
Query: 68 QKWGSWNP 75
WG+W P
Sbjct: 99 DSWGNWRP 106
^ = sptrembl|Q9XXV4|Q9XXV4 ENDO-1,4-BETA-XYLANASE.//:trembl|AB011274|AB011274_1
gene: "polyX"; product: "endo-1,4-beta-xylanase"; Polyplastron
multivesiculatum polyX mRNA for endo-1,4-beta-xylanase, complete
cds. //:gp|AB011274|4587369 endo-1,4-beta-xylanase [Polyplastron
multivesiculatum]
Length = 175
0 40 80 120 160
| | | | | |175
sptrembl|Q9XXV4|Q9XXV | __________________________________________________
Local hits (HSPs) | ______________
Score = 66 (28.3 bits), Expect = 0.31, P = 0.27
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 23 TLCFANAGTMPVAIYGVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75
T + GT+ VA Y V++ +GN+ + + + R+ P +E + WGSW P
Sbjct: 30 TKTWQQLGTISVA-YNVDYRPNGNSYMCVYGWTRS---PLIEYYIVDSWGSWRP 79
^ = trembl|A45313|A45313_1 product: "XYLANASE"; Sequence 18 from Patent
WO9518219. //:gp|A45313|2299797 XYLANASE [unidentified]
Length = 247
0 50 100 150 200
| | | | | |247
trembl|A45313|A45313_ | __________________________________________________
Local hits (HSPs) | ____________
Score = 68 (29.0 bits), Expect = 0.34, P = 0.29
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
N N+ L + +T G M + YG N+ +GN + + + + DP +E +
Sbjct: 68 NVNNILFRKGKKFNETQTHQQVGNMSIN-YGANFQPNGNAYLCV-YGWTV-DPLVEYYIV 124
Query: 68 QKWGSWNP 75
WG+W P
Sbjct: 125 DSWGNWRP 132
^ = trembl|A48226|A48226_1 unnamed ORF; Sequence 5 from Patent EP0698667.
//:trembl|A48232|A48232_1 unnamed ORF; Sequence 11 from Patent
EP0698667. //:gp|A48226|2302074 unnamed protein product
[unidentified]//:gp|A48232|2302080 unnamed protein product
[unidentified]
Length = 248
0 50 100 150 200
| | | | | |248
trembl|A48226|A48226_ | __________________________________________________
Local hits (HSPs) | ____________
Score = 68 (29.0 bits), Expect = 0.35, P = 0.29
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
N N+ L + +T G M + YG N+ +GN + + + + DP +E +
Sbjct: 69 NVNNILFRKGKKFNETQTHQQVGNMSIN-YGANFQPNGNAYLCV-YGWTV-DPLVEYYIV 125
Query: 68 QKWGSWNP 75
WG+W P
Sbjct: 126 DSWGNWRP 133
^ = trembl|A68006|A68006_1 unnamed ORF; Sequence 1 from Patent WO9743409.
//:gp|A68006|4756811 unnamed protein product [unidentified]
Length = 248
0 50 100 150 200
| | | | | |248
trembl|A68006|A68006_ | __________________________________________________
Local hits (HSPs) | ____________
Score = 68 (29.0 bits), Expect = 0.35, P = 0.29
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
N N+ L + +T G M + YG N+ +GN + + + + DP +E +
Sbjct: 69 NVNNILFRKGKKFNETQTHQQVGNMSIN-YGANFQPNGNAYLCV-YGWTV-DPLVEYYIV 125
Query: 68 QKWGSWNP 75
WG+W P
Sbjct: 126 DSWGNWRP 133
^ = trembl|A68016|A68016_1 unnamed ORF; Sequence 11 from Patent WO9743409.
//:gp|A68016|4756819 unnamed protein product [unidentified]
Length = 248
0 50 100 150 200
| | | | | |248
trembl|A68016|A68016_ | __________________________________________________
Local hits (HSPs) | ____________
Score = 68 (29.0 bits), Expect = 0.35, P = 0.29
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
N N+ L + +T G M + YG N+ +GN + + + + DP +E +
Sbjct: 69 NVNNILFRKGKKFNETQTHQQVGNMSIN-YGANFQPNGNAYLCV-YGWTV-DPLVEYYIV 125
Query: 68 QKWGSWNP 75
WG+W P
Sbjct: 126 DSWGNWRP 133
^ = sptrembl|Q59257|Q59257 ENDO-1, 4-BETA-XYLANASE PRECURSOR (EC
3.2.1.8).//:trembl|X59059|BSXYNY_1 gene: "xynY"; product: "endo-1,
4-beta-xylanase"; Bacillus sp. xynY gene for
endo-1,4-beta-D-xylanase //:pironly|S51779|S51779
endo-1,4-beta-xylanase (EC 3.2.1.8) Y precursor - Bacillus sp.
(strain YA-335)//:gp|X59059|1334251 endo-1, 4-beta-xylanase
[Bacillus sp. YA-335]
Length = 354
0 70 140 210 280 350
| | | | | |354
sptrembl|Q59257|Q5925 | __________________________________________________
Local hits (HSPs) | _________
Score = 68 (29.0 bits), Expect = 0.58, P = 0.44
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
N N+ L + +T G M + YG + +GN+ +T+ + + DP +E +
Sbjct: 68 NVNNILFRKGKKFDETQTHQQIGNMSIN-YGATYNPNGNSYLTV-YGWTV-DPLVEFYIV 124
Query: 68 QKWGSWNP 75
WG+W P
Sbjct: 125 DSWGTWRP 132
^ = sptrembl|Q9RC94|Q9RC94 XYLANASE J.//:trembl|AB029319|AB029319_1 gene:
"xynJ"; product: "xylanase J"; Bacillus sp. 41M-1 xynJ gene for
xylanase J, complete cds. //:gp|AB029319|5381269 xylanase J
[Bacillus sp. 41M-1]
Length = 354
0 70 140 210 280 350
| | | | | |354
sptrembl|Q9RC94|Q9RC9 | __________________________________________________
Local hits (HSPs) | _________
Score = 68 (29.0 bits), Expect = 0.58, P = 0.44
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
N N+ L + +T G M + YG + +GN+ +T+ + + DP +E +
Sbjct: 68 NVNNILFRKGKKFDETQTHQQIGNMSIN-YGATYNPNGNSYLTV-YGWTV-DPLVEFYIV 124
Query: 68 QKWGSWNP 75
WG+W P
Sbjct: 125 DSWGTWRP 132
^ = pironly|S70821|S70821 H+-transporting ATP synthase (EC 3.6.1.34) beta chain
- red alga (Cyanidium cald
Length = 63
0 20 40 60
| | | | |63
pironly|S70821|S70821 | __________________________________________________
Local hits (HSPs) | ______________________________
Score = 59 (25.8 bits), Expect = 0.67, P = 0.49
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 26 FANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
F N GT+P IY ++ N +T + Q+ L D R+ T+ +
Sbjct: 23 FPN-GTLP-KIYNAISIKHKNKTITCEVQQLLGDNRVRTVAM 62
^ = sptrembl|Q52644|Q52644 XYNA.//:trembl|U43089|RA43089_1 gene: "xynA";
product: "XynA"; Ruminococcus albus xylanase A (xynA) gene,
complete cds. //:gp|U43089|1150874 XynA [Ruminococcus albus]
Length = 680
0 140 280 420 560
| | | | | |680
sptrembl|Q52644|Q5264 | __________________________________________________
Local hits (HSPs) | ___
Score = 70 (29.7 bits), Expect = 0.80, P = 0.55
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 23 TLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQKWGSWNP 75
T + G + V YGV++ GN+ + + + + DP +E ++ WGSW P
Sbjct: 110 TKTYKELGNISVK-YGVDYQPDGNSYMCV-YGWTI-DPLVEFYIVESWGSWRP 159
^ = sptrembl|Q59665|Q59665 ENDO-1,4-BETA-GLUCANASE (EC 3.2.1.4) (CELLULASE)
(ENDOGLUCANASE) (CARBOXYMETHYL
CELLULASE).//:trembl|X86798|PFCELEGE_1 gene: "celE"; product:
"endo-1,4-beta-glucanase"; P.fluorescens celE gene
//:pironly|S56132|S56132 cellulase (EC 3.2.1.4) precursor -
Pseudomonas fluorescens//:gp|X86798|806574 endo-1,4-beta-glucanase
[Pseudomonas fluorescens]
Length = 570
0 120 240 360 480
| | | | | |570
sptrembl|Q59665|Q5966 | __________________________________________________
Local hits (HSPs) | ____
Score = 68 (29.0 bits), Expect = 1.1, P = 0.66
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 27 ANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQKW-GSWNPGHIHE 80
AN GT P+ + ++W S + VT + N+S T++ W GS PG E
Sbjct: 492 ANNGTSPINGWNLSWSYSDGSRVTNSWNANVSGNNPYTVSNLGWNGSIQPGQAVE 546
^ = sptrembl|O77398|O77398 XYLANASE PRECURSOR
(FRAGMENT).//:trembl|AJ009828|PMU9828_1 gene: "xynA"; product:
"xylanase"; Polyplastron multivesiculatum mRNA for xylanase,
partial //:gp|AJ009828|3646394 xylanase [Polyplastron
multivesiculatum]
Length = 235
0 50 100 150 200
| | | | | |235
sptrembl|O77398|O7739 | __________________________________________________
Local hits (HSPs) | ________
Score = 63 (27.2 bits), Expect = 1.1, P = 0.68
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 30 GTMPVAIYGVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75
GT+ V Y V++ +GN+ + + + RN P +E ++ WGSW P
Sbjct: 79 GTVLVN-YDVDYNPNGNSYLCIYGWTRN---PLVEYYIVESWGSWRP 121
^ = swiss|O95239|KIF4_HUMAN KINESIN-LIKE PROTEIN KIF4.
Length = 1232
0 250 500 750 1000
| | | | | |1232
swiss|O95239|KIF4_HUM | __________________________________________________
Local hits (HSPs) | _ _ _
Score = 56 (24.8 bits), Expect = 1.4, Sum P(3) = 0.76
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 49 VTLQFQRNLSDPRLETITLQK 69
+ Q+Q N+ +P LE I LQK
Sbjct: 553 IQYQYQDNIKEPELEVINLQK 573
Score = 49 (22.3 bits), Expect = 1.4, Sum P(3) = 0.76
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 11 SYLEIHNNEGRDTLC 25
SYLEI+N E D LC
Sbjct: 139 SYLEIYNEEILDLLC 153
Score = 36 (17.7 bits), Expect = 1.4, Sum P(3) = 0.76
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 31 TMPVAIYGVNWVESGNNVVTL 51
T+ VA+ V+ +E GNN T+
Sbjct: 180 TVLVALDTVSCLEQGNNSRTV 200
^ = sptremblnew|AAD05492|AAD05492 KINESIN SUPERFAMILY MOTOR
KIF4.//:trembl|AF071592|AF071592_1 product: "kinesin superfamily
motor KIF4"; Homo sapiens kinesin superfamily motor KIF4 mRNA,
complete cds. //:gp|AF071592|7266951 kinesin superfamily motor KIF4
[Homo sapiens]
Length = 1232
0 250 500 750 1000
| | | | | |1232
sptremblnew|AAD05492| | __________________________________________________
Local hits (HSPs) | _ _ _
Score = 56 (24.8 bits), Expect = 1.4, Sum P(3) = 0.76
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 49 VTLQFQRNLSDPRLETITLQK 69
+ Q+Q N+ +P LE I LQK
Sbjct: 553 IQYQYQDNIKEPELEVINLQK 573
Score = 49 (22.3 bits), Expect = 1.4, Sum P(3) = 0.76
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 11 SYLEIHNNEGRDTLC 25
SYLEI+N E D LC
Sbjct: 139 SYLEIYNEEILDLLC 153
Score = 36 (17.7 bits), Expect = 1.4, Sum P(3) = 0.76
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 31 TMPVAIYGVNWVESGNNVVTL 51
T+ VA+ V+ +E GNN T+
Sbjct: 180 TVLVALDTVSCLEQGNNSRTV 200
^ = sptrembl|O50973|O50973 REV PROTEIN (REV).//:trembl|AE000791|AE000791_9 gene:
"BBC10"; product: "rev protein (rev)"; Borrelia burgdorferi
plasmid cp9, complete plasmid sequence. //:pironly|B70221|B70221
rev protein (rev) homolog - Lyme disease spirochete plasmid
C/cp9//:gp|AE000791|2689921 rev protein (rev) [Borrelia
burgdorferi]
Length = 175
0 40 80 120 160
| | | | | |175
sptrembl|O50973|O5097 | __________________________________________________
Local hits (HSPs) | _____________
Score = 62 (26.9 bits), Expect = 1.7, P = 0.83
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 2 INRTDCNENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVV 49
I R + N+N LE + + R A T P+A++ +N E +VV
Sbjct: 115 IQRFNANDNDDLEKNKLKIRSIALSAGVNTSPIALHAINIKELSEDVV 162
^ = sptrembl|O52375|O52375 FAMILY 11 XYLANASE (EC 3.2.1.8)
(ENDO-1,4-BETA-XYLANASE) (1,4-BETA-D- XYLAN
XYLANOHYDROLASE).//:trembl|AF036925|AF036925_1 gene: "xynD";
product: "family 11 xylanase"; Caldicellulosiruptor sp. Rt69B.1
family 11 xylanase (xynD) gene, complete cds.
//:gp|AF036925|2760910 family 11 xylanase [Caldicellulosiruptor sp.
Rt69B.1]
Length = 361
0 80 160 240 320
| | | | | |361
sptrembl|O52375|O5237 | __________________________________________________
Local hits (HSPs) | _____
Score = 63 (27.2 bits), Expect = 2.1, P = 0.88
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 30 GTMPVAIYGVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75
GT+ + Y + +GN+ + + + RN P +E ++ WGSW P
Sbjct: 75 GTVKIT-YSATYNPNGNSYLCIYGWSRN---PLVEFYIVESWGSWRP 117
^ = trembl|AJ289343|HSA289343_1 gene: "IGHV"; product: "immunoglobulin heavy
chain variable region"; Homo sapiens partial IGHV gene for
immunoglobulin heavy chain variable region, clone B02
//:gp|AJ289343|8249657 immunoglobulin heavy chain variable region
[Homo sapiens]
Length = 109
0 30 60 90
| | | | |109
trembl|AJ289343|HSA28 | __________________________________________________
Local hits (HSPs) | _________________
Score = 60 (26.2 bits), Expect = 2.1, P = 0.88
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 2 INRTDCNENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNW 41
I+R + YL+I++ DT + A MPVA VNW
Sbjct: 57 ISRDNSKNTLYLQINSLRAEDTAVYYCA-RMPVAAAQVNW 95
^ = trembl|A47928|A47928_1 gene: "XYND"; product: "XYLANASE D"; Sequence 12
from Patent WO9534662. //:gp|A47928|2301792 XYLANASE D
[unidentified]
Length = 368
0 80 160 240 320
| | | | | |368
trembl|A47928|A47928_ | __________________________________________________
Local hits (HSPs) | _____
Score = 63 (27.2 bits), Expect = 2.1, P = 0.88
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 30 GTMPVAIYGVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75
GT+ + Y + +GN+ + + + RN P +E ++ WGSW P
Sbjct: 82 GTVKIT-YSATYNPNGNSYLCIYGWSRN---PLVEFYIVESWGSWRP 124
^ = pironly|A61149|A61149 endo-1,4-beta-xylanase (EC 3.2.1.8) - fungus
(Trichoderma viride) (fragment)
Length = 50
0 10 20 30 40 50
| | | | | |50
pironly|A61149|A61149 | __________________________________________________
Local hits (HSPs) | ___________________________________
Score = 54 (24.1 bits), Expect = 2.3, P = 0.90
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNV 48
N Y + N+G + + N P + VNW SGN V
Sbjct: 11 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFV 46
^ = sptremblnew|CAC05501|CAC05501 PHYTOCHROME KINASE SUBSTRATE 1-LIKE
PROTEIN.//:trembl|AL391716|ATF21E1_11 gene: "F21E1_110"; product:
"phytochrome kinase substrate 1-like protein"; Arabidopsis
thaliana DNA chromosome 5, BAC clone F21E1 (ESSA project)
//:gp|AL391716|9955574 phytochrome kinase substrate 1-like protein
[Arabidopsis thaliana]
Length = 406
0 90 180 270 360
| | | | | |406
sptremblnew|CAC05501| | __________________________________________________
Local hits (HSPs) | ________
Score = 63 (27.2 bits), Expect = 2.4, P = 0.91
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 3 NRTDCNENSYLEIHNNEGRDTLCFANAGTMPVAIYGVN--WVESGNNVVTLQFQRNLSDP 60
N D + +SYL+ NNE + N T ++I+ + E+G+N Q RNLS P
Sbjct: 28 NDIDVSFSSYLKPDNNEQQQK---ENEDT-ELSIFEARSYFSENGSNDSRCQ-TRNLSGP 82
Query: 61 RLETITLQKWGSWNPG 76
R ++ K S+ G
Sbjct: 83 RFSSVASAKVSSFTVG 98
^ = pironly|A44595|A44595 endo-1,4-beta-xylanase (EC 3.2.1.8) IIB
(proteinase-sensitive) - fungus (Trichod
Length = 190
0 40 80 120 160
| | | | | |190
pironly|A44595|A44595 | __________________________________________________
Local hits (HSPs) | _________ _______
Score = 54 (24.1 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNV 48
N Y + N+G + + N P + VNW SGN V
Sbjct: 11 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFV 46
Score = 39 (18.8 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 44 SGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75
+GN+ +++ + RN P +E ++ +G++NP
Sbjct: 69 NGNSYLSVYGWSRN---PLIEYYIVENFGTYNP 98
^ = pironly|A44594|A44594 endo-1,4-beta-xylanase (EC 3.2.1.8) IIA - fungus
(Trichoderma viride)
Length = 190
0 40 80 120 160
| | | | | |190
pironly|A44594|A44594 | __________________________________________________
Local hits (HSPs) | _________ _______
Score = 54 (24.1 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNV 48
N Y + N+G + + N P + VNW SGN V
Sbjct: 11 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFV 46
Score = 39 (18.8 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 44 SGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75
+GN+ +++ + RN P +E ++ +G++NP
Sbjct: 69 NGNSYLSVYGWSRN---PLIEYYIVENFGTYNP 98
^ = swiss|P48824|XYNB_ASPAK ENDO-1,4-BETA-XYLANASE B PRECURSOR (EC 3.2.1.8)
(XYLANASE B) (1,4-BETA-D-XYLAN XYLANOHYDROLASE
B).//:trembl|D38070|AKXYNB_1 gene: "xynB"; product: "xylanase-B";
Aspergillus kawachii xynB gene for xylanase-B, complete cds.
//:gp|D38070|1065986 xylanase-B [Aspergillus kawachii]
Length = 225
0 50 100 150 200
| | | | | |225
swiss|P48824|XYNB_ASP | __________________________________________________
Local hits (HSPs) | __________
Score = 62 (26.9 bits), Expect = 2.7, P = 0.93
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 28 NAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQKWGSWNPG 76
N G+ Y N+ SGN +++ +DP +E ++ +G +NPG
Sbjct: 88 NPGSAKDITYSGNFTPSGNGYLSVYGWT--TDPLIEYYIVESYGDYNPG 134
^ = sptrembl|Q9LSG6|Q9LSG6 CDC45 (CELL DIVISION CYCLE 45)-LIKE
PROTEIN.//:tremblnew|AB026647|AB026647_4 product: "CDC45 (cell
division cycle 45)-like protein"; Arabidopsis thaliana genomic
DNA, chromosome 3, P1 clone: MJL12. //:trembl|AB026647|AB026647_4
product: "CDC45 (cell division cycle 45)-like protein";
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJL12.
//:gp|AB026647|9294166 CDC45 (cell division cycle 45) -like protein
[Arabidopsis thaliana]//:gpnew|AB026647|9294166 CDC45 (cell
division cycle 45) -like protein [Arabidopsis thaliana]
Length = 596
0 120 240 360 480
| | | | | |596
sptrembl|Q9LSG6|Q9LSG | __________________________________________________
Local hits (HSPs) | __
Score = 64 (27.6 bits), Expect = 3.0, P = 0.95
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNW 41
+S+LEIH G LC + + PV I +NW
Sbjct: 62 SSFLEIHKYAGPAGLCSTSLESPPVTILLINW 93
^ = pironly|JQ1935|JQ1935 endo-1,4-beta-xylanase (EC 3.2.1.8) A precursor -
Clostridium stercorarium
Length = 511
0 110 220 330 440
| | | | | |511
pironly|JQ1935|JQ1935 | __________________________________________________
Local hits (HSPs) | ___
Score = 63 (27.2 bits), Expect = 3.2, P = 0.96
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 34 VAIYGVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75
V YG ++ +GN+ + + + RN P +E ++ WGSW P
Sbjct: 97 VVEYGCDYNPNGNSYLCVYGWTRN---PLVEYYIVESWGSWRP 136
^ = swiss|P33558|XYNA_CLOSR ENDO-1,4-BETA-XYLANASE A PRECURSOR (EC 3.2.1.8)
(XYLANASE A) (1,4-BETA-D-XYLAN XYLANOHYDROLASE
A).//:trembl|D13325|CSXYNA_1 gene: "xynA"; product: "xylanase";
Clostridium stercorarium xynA gene for xylanase, complete cds.
//:gp|D13325|984792 xylanase [Clostridium stercorarium]
Length = 512
0 110 220 330 440
| | | | | |512
swiss|P33558|XYNA_CLO | __________________________________________________
Local hits (HSPs) | ___
Score = 63 (27.2 bits), Expect = 3.2, P = 0.96
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 34 VAIYGVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75
V YG ++ +GN+ + + + RN P +E ++ WGSW P
Sbjct: 97 VVEYGCDYNPNGNSYLCVYGWTRN---PLVEYYIVESWGSWRP 136
^ = swiss|P17137|XYNA_CLOAB ENDO-1,4-BETA-XYLANASE PRECURSOR (EC 3.2.1.8)
(XYLANASE) (1,4-BETA-D- XYLAN
XYLANOHYDROLASE).//:trembl|M31726|CAXYNB_1 C.acetobutylicum
xylanase (Xynb) gene, complete cds. //:gp|M31726|144934 xylanase
precursor (EC 3.2.1.8) [Clostridium acetobutylicum]
Length = 261
0 60 120 180 240
| | | | | |261
swiss|P17137|XYNA_CLO | __________________________________________________
Local hits (HSPs) | _________
Score = 62 (26.9 bits), Expect = 3.4, P = 0.97
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 22 DTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQKWGSWNP 75
DT + G + V Y N+ GN+ + + S P +E + WGSW P
Sbjct: 114 DTQTYKQLGNISVN-YDCNYQPYGNSYLCVYGWT--SSPLVEYYIVDSWGSWRP 164
^ = sptrembl|Q9XI03|Q9XI03 F8K7.17 PROTEIN.//:trembl|AC007727|AC007727_17 gene:
"F8K7.17"; Arabidopsis thaliana chromosome 1 BAC F8K7 sequence,
complete sequence. //:gp|AC007727|5263326 Similar to gb|U06698
neuronal kinesin heavy chain from Homo sapiens and contains a
PF|00225 Kinesin motor domain. EST gb|AA042507 comes from this
gene. [Arabidopsis thaliana]
Length = 909
0 190 380 570 760
| | | | | |909
sptrembl|Q9XI03|Q9XI0 | __________________________________________________
Local hits (HSPs) | ___
Score = 65 (27.9 bits), Expect = 3.8, P = 0.98
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67
+E+S IHN G ++ ++ AGT P ++ +N V + + + L+ LE L
Sbjct: 793 DESSGKNIHNRNGEESEIYSGAGT-PTSVMSLNRVFAQEETKEIYNETALNSQALEIENL 851
Query: 68 QK 69
+K
Sbjct: 852 KK 853
^ = sptrembl|Q55405|Q55405 HYPOTHETICAL 13.9 KDA
PROTEIN.//:trembl|D64003|SSSLLE_60 product: "hypothetical protein";
Synechocystis sp. PCC6803 complete genome, 22/27, 2755703-2868766.
//:pironly|S75764|S75764 hypothetical protein slr0579 -
Synechocystis sp. (strain PCC 6803)//:gp|D64003|1001255
hypothetical protein [Synechocystis sp.]
Length = 117
0 30 60 90
| | | | |117
sptrembl|Q55405|Q5540 | __________________________________________________
Local hits (HSPs) | _____________
Score = 59 (25.8 bits), Expect = 5.2, P = 0.99
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 1 MINRTDCNENSYLEIHNNE--GRDTLCFANAGT 31
M NR+D NSY HN G+D L N G+
Sbjct: 54 MPNRSDTYPNSYYRGHNRNYRGKDELTIINGGS 86
^ = trembl|A86787|A86787_1 unnamed ORF; Sequence 1 from Patent WO9838321.
//:gp|A86787|6735594 unnamed protein product [Aspergillus
tubingensis]
Length = 226
0 50 100 150 200
| | | | | |226
trembl|A86787|A86787_ | __________________________________________________
Local hits (HSPs) | __________
Score = 61 (26.5 bits), Expect = 7.1, P = 1.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 28 NAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQKWGSWNPG 76
NAG+ Y + SGN +++ +DP +E ++ +G +NPG
Sbjct: 88 NAGSAKDITYSGTFTPSGNGYLSVYGWT--TDPLIEYYIVESYGDYNPG 134
^ = trembl|M10723|BTPOMC_1 Bovine ACTH mRNA fragment encoding corticotropin
complete cds and beta-lipotropin, 5' end. //:gp|M10723|163561
preproadrenocorticotropic hormone (ACTH) [Bos taurus]
Length = 67
0 20 40 60
| | | | |67
trembl|M10723|BTPOMC_ | __________________________________________________
Local hits (HSPs) | _____________________
Score = 49 (22.3 bits), Expect = 7.7, P = 1.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 33 PVAIYGVNWVESGNNVVTLQFQRNLSDPRLE 63
PV +Y N E L+F+R L+ RLE
Sbjct: 19 PVKVYP-NGAEDSAQAFPLEFKRELTGERLE 48
^ = sptrembl|Q55922|Q55922 HYPOTHETICAL 25.9 KDA
PROTEIN.//:trembl|D64005|SSSLRG_27 product: "hypothetical protein";
Synechocystis sp. PCC6803 complete genome, 24/27, 3002966-3138603.
//:pironly|S76993|S76993 hypothetical protein - Synechocystis sp.
(strain PCC 6803)//:gp|D64005|1001805 hypothetical protein
[Synechocystis sp.]
Length = 244
0 50 100 150 200
| | | | | |244
sptrembl|Q55922|Q5592 | __________________________________________________
Local hits (HSPs) | ___________
Score = 61 (26.5 bits), Expect = 8.0, P = 1.0
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 2 INRTDCNE-NSYLEIHNNE-GRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQ 54
++ TD ++ +++E N++ GR + F NAG MP++ VE +N++ + +
Sbjct: 62 VDVTDRHDVKAFVEFANDKFGRVDVIFNNAGVMPLSPMNALKVEEWDNMINVNIR 116
Parameters:
matrix=BLOSUM62
E=10
V=100
B=100
hspmax=10
filter=none
echofilter
stats
qtype
qres
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 87 87 10. 65 3 11 22 0.24 29
28 0.24 30
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 64 (29.4 bits) 471 (216.6 bits) 42 42
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 3111 36692655 8567277 27956109 169269 249
Database: /dove2/data/db/nrdb
Title: nrdb Release 12.Jan.2001
Release date: 12.Jan.2001
Posted date: 11:09:32 PM MET Jan 12, 2001
Last modified: unknown
First created: unknown
Format: BLAST-1.4
# of letters in database: 189,376,495
# of sequences in database: 599,711
# of database sequences satisfying E: 36
No. of states in DFA: 559 (110 KB)
Total size of DFA: 179 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 58.18u 2.14s 60.32t Elapsed: 00:00:16
Total cpu time: 58.25u 2.20s 60.45t Elapsed: 00:00:17
Start: Tue Jan 23 10:14:54 2001 End: Tue Jan 23 10:15:11 2001
Y.P. Yuan Your comments/suggestions are highly appreciated! Thanks