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Results for UserSeq

There are no Pfam-A domains higher than gathering threshold
 
 

Matches to Pfam-B

Domain Start End Evalue Alignment
Pfam-B_1779 1 66 1.8e-34 Align

Pfam-B_1779[66 residues]
 

Potential matches - Domains with Evalues above the cutoff

Domain Start End Bits Evalue Alignment
rubredoxin 2 13 1.50 74 Align
TFIIS 1 36 -13.70 60 Align
GATA 2 42 -9.40 47 Align

 

Alignments of Pfam-A domains to HMMs

Format for fetching alignments to seed

Alignment of rubredoxin vs UserSeq/2-13 

                   *->vCPvCGapKdqF<-*
                      +CP+C+ p ++F   
     UserSeq     2    KCPRCDSPNTKF    13   

Alignment of TFIIS vs UserSeq/1-36 

                   *->fpCPkCKsrnttymelQTRsADEPpTvFykCkkCGkrwk<-*
                      ++CP C s nt +       +  P   ++ Ck+C   w    
     UserSeq     1    LKCPRCDSPNTKFCYYNNYNLSQP---RHFCKSCRRYWT    36   

Alignment of GATA vs UserSeq/2-42 

                   *->egraCtnCytttTplWRrgpsqnmgre..LCnaCGLyyKkygqlr<-
                          C  C   +T+  + ++  n+ ++++ C +C+ y+ k g lr  
     UserSeq     2    ---KCPRCDSPNTKFCYYNNY-NLSQPrhFCKSCRRYWTKGGALR   42   

                   *
                    
     UserSeq     -   -    

Alignments of Pfam-B domains to best-matching Pfam-B sequence

Format for fetching alignments to Pfam-B families: 

Query UserSeq/1-66 matching Pfam-B_1779 

      O82156  29 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGS 78
                 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGS
     UserSeq   1 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGS 50

      O82156  79 RKNATKRSTSSSSSAS 94
                 RKNATKRSTSSSSSAS
     UserSeq  51 RKNATKRSTSSSSSAS 66

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