SRS - Sequence Retrieval System

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SRSWWW  Exercises

Rodrigo López Serrano (European Bioinformatics Institute, Cambridge).

Table of contents

SRS - Sequence Retrieval System

Slide 2

Requirements

SRS history

What is SRS(1/2)

What is SRS(2/2)

SRS Linking

Main advantage of SRS linking

Library network

Slide 10

Slide 11

Standard queries

Query operators (and -&, or -|, butnot -!)

Slide 14

SRS user interface

Two interfaces

getz

Slide 18

wgetz

Slide 20

Slide 21

Slide 22

Slide 23

Slide 24

Slide 25

Slide 26
 


SRS applications

Blast under SRS

Launching blast

Blast results

SRS indices & databases

SRS indexing

Overview of SRS indices

Checking the content of an SRS index

EMBL

GenBank

Swiss-Prot

AAGENESEQ

Interpro

Prosite

Brenda

PATHWAY

MEDLINE

Remote use of SRS

Fasta and SRS at the EBI

MPsrch and SRS

Remote linking to SRS

SRS at the EBI

EBI Production with SRS

Swiss-Prot, TrEMBL and EMBL

EBI's SRS server

External Services and SRS

Why this setup?